species:   Fugra
pid:       PID1008
parent:    FgmilR-7dps-100
paralog:   
locus:     NC_026477.1:4765403-4765581
matures:   ['UACAAGGAAAUGAUCGAUAAGCA', 'CUUAGAUUAUUUAUUUUUGUAUC']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026477.1:4765403-4765581

0 out of bounds
5 alignments
5 proper strand
5 stranded perfect matches

*************************                                                                                                                                 *************************
UCUACAAGGAAAUGAUCGAUAAGCAUCAAUCACAUCACUUCUAUCGAAUGAGAUGUACAGAGUAGUAUGAUUAAGUUGGCUUGUCUUGCCUCAAGGUUGGCCGCUGGAGCAUGAGACGAAAUUAUUAGAAGAGUUUAUGCUCCUUAGGCCAGAAUGCUUAGAUUAUUUAUUUUUGUAUC
..(((((((((((((((..(((((((.(((((.((.((((.((((......))))....)))).)).))))).....(((.......)))......((((((...((((((((((.(...............)))))))))))...)))))).))))))))))))))..))))))))..
--UACAAGGAAAUGAUCGAUAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=5 c
------------------------------------------------------------------------------------------------------------------------------------------------------------CUUAGAUUAUUUAUUUUUGUAUC l=23 a=0 c*
--UACAAGGAAAUGAUCGAUAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=5 ma
------------------------------------------------------------------------------------------------------------------------------------------------------------CUUAGAUUAUUUAUUUUUGUAUC l=23 a=0 ma*

--UACAAGGAAAUGAUCGAUAAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=5 (c,ma)

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
